PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000358.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 281aa    MW: 32126.9 Da    PI: 6.797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000358.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95.2e-33810632128
                      NAM  32 evikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk 115
                              + i+ev++yk+ P++L  +  k +ek+ yfF++rd+ky++g+r++ra+ +gyWkat  dk+++++ +g ++g kktLv+y+gr pk
  Itr_sc000358.1_g00016.1   8 NQIQEVNLYKYSPEELSgRYPKLGEKDFYFFTHRDRKYKNGNRPSRAAGDGYWKATTADKPITHRvDGPVIGHKKTLVYYEGRPPK 93 
                              569*************9556666999**************************************989999**************** PP

                      NAM 116 gektdWvmheyrl 128
                              gekt+W+mhe+++
  Itr_sc000358.1_g00016.1  94 GEKTNWIMHEFTV 106
                              ***********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.4021136IPR003441NAC domain
SuperFamilySSF1019411.83E-396136IPR003441NAC domain
PfamPF023658.3E-1328105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNYVLPHNQI QEVNLYKYSP EELSGRYPKL GEKDFYFFTH RDRKYKNGNR PSRAAGDGYW  60
KATTADKPIT HRVDGPVIGH KKTLVYYEGR PPKGEKTNWI MHEFTVEEGT ITPKPRGDNV  120
DPMRLDDWVL CRIHKKAAGK VGKSTQKEDE NINIVEANTS PPQDEQSEEV QGVQFSLPLN  180
EMFTFHDPFV FGNGPAYNDP QFINSDLFIP ENIYNQTFDF DIDHFLSSQN VEPPTLLSFQ  240
KAESPTPLSP QKVKTPNPNA SQNTCKDVKH GNCKRKEPPS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-36513642168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603097.18e-55PREDICTED: NAC transcription factor 29-like
RefseqXP_016487930.11e-54PREDICTED: NAC transcription factor 29-like
SwissprotA0SPJ63e-40NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLK4D3D22e-51K4D3D2_SOLLC; Uncharacterized protein
STRINGSolyc10g083450.1.15e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-40NAC domain containing protein 32